{"id":2077,"date":"2017-10-18T14:06:40","date_gmt":"2017-10-18T12:06:40","guid":{"rendered":"https:\/\/jakobssonlab.iob.uu.se\/?page_id=2077"},"modified":"2025-02-10T13:25:51","modified_gmt":"2025-02-10T12:25:51","slug":"compass","status":"publish","type":"page","link":"https:\/\/jakobssonlab.iob.uu.se\/index.php\/software\/compass\/","title":{"rendered":"COMPASS"},"content":{"rendered":"\n

COMPASS<\/h1>\n\n\n\n

COalescent siMulation Program Allowing Serial Samples – a program for generation time serial samples under an infinite sites model<\/h4>\n\n\n\n

The program COMPASS generates serial samples collected at various points in time. The samples are generated using coalescence simulations permitting various demographic scenarios. COMPASS uses an infinite sites model to generate polymorphism data for the samples. By generating serially sampled population-genetic data, COMPASS provide means of investigating the properties of data that has been collected at different time-points, and potentially, aid in interpreting the results from empirical data, for example polymorphism data collected from both present-day samples and historic samples. The program is written in C++ and it is freely available. A program note describing COMPASS was published in Bioinformatics<\/a>.<\/p>\n\n\n\n

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Download software<\/h2>\n\n\n\n

Version 1.0.1 (March 17, 2010)*<\/p>\n\n\n\n

*If you are interested in previous versions of the software, please email Mattias Jakobsson<\/a><\/p>\n\n\n\n

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Software for UNIX (with manual)<\/a><\/div>\n<\/div>\n\n\n\n

To use the the UNIX version, unzip and untar the files in an appropriate directory using:
tar xvzf filename.tar.gz<\/strong>
where \u201cfilename.tar.gz\u201d is the downloaded file.<\/p>\n\n\n\n

Run the program by typing:
.\/COMPASS<\/strong> [options \u2014 see manual]<\/p>\n<\/div>\n\n\n\n

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Software for Windows (with manual)<\/a><\/div>\n<\/div>\n\n\n\n

In windows, open a command prompt and move to the location of the program. Run the program by typing:
COMPASS<\/strong> [options \u2014 see manual]
If you run the program without options, a short summary of available options will be printed to the screen. <\/p>\n<\/div>\n<\/div>\n\n\n\n

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Software for Mac OSX (with manual)<\/a><\/div>\n<\/div>\n<\/div>\n\n\n\n
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Manual only<\/a><\/div>\n<\/div>\n<\/div>\n<\/div>\n\n\n\n
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Software history:<\/h4>\n\n\n\n