{"id":2169,"date":"2024-10-24T14:24:25","date_gmt":"2024-10-24T12:24:25","guid":{"rendered":"https:\/\/jakobssonlab.iob.uu.se\/?page_id=2169"},"modified":"2025-02-11T11:45:55","modified_gmt":"2025-02-11T10:45:55","slug":"haplopop","status":"publish","type":"page","link":"https:\/\/jakobssonlab.iob.uu.se\/index.php\/software\/haplopop\/","title":{"rendered":"HAPLOPOP"},"content":{"rendered":"\n<div class=\"wp-block-group is-layout-constrained wp-block-group-is-layout-constrained\">\n<h1 class=\"wp-block-heading is-style-underlined-heading\">HAPLOPOP<\/h1>\n\n\n\n<h3 class=\"wp-block-heading\">HAPLOtypes for POPulation inference<\/h3>\n\n\n\n<p>The software&nbsp;helps to infer&nbsp;haplotypes within genomic windows of fixed size in order to improve accurate population assignment and structure inferences.<\/p>\n\n\n\n<p>HAPLOPOP utilizes&nbsp;the Gain of Informativeness for Assignment statistic that provides a criterion to decide whether markers should be combined into haplotypes. <\/p>\n\n\n\n<p>The software was introduced in <a href=\"http:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/s12859-015-0661-6\" target=\"_blank\" rel=\"noopener\">Duforet-Frebourg et al. (2015)<\/a><\/p>\n\n\n\n<figure class=\"wp-block-image alignleft size-full is-resized\"><img decoding=\"async\" src=\"https:\/\/jakobssonlab.iob.uu.se\/wp-content\/uploads\/2024\/05\/duforet_2015_smallv2.jpg\" alt=\"\" class=\"wp-image-1353\" style=\"width:600px\"\/><\/figure>\n\n\n\n<div style=\"height:100px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n<\/div>\n","protected":false},"excerpt":{"rendered":"<p>HAPLOPOP HAPLOtypes for POPulation inference The software&nbsp;helps to infer&nbsp;haplotypes within genomic windows of fixed size in order to improve accurate [&hellip;]<\/p>\n","protected":false},"author":2,"featured_media":2155,"parent":16,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-2169","page","type-page","status-publish","has-post-thumbnail","hentry"],"_links":{"self":[{"href":"https:\/\/jakobssonlab.iob.uu.se\/index.php\/wp-json\/wp\/v2\/pages\/2169","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/jakobssonlab.iob.uu.se\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/jakobssonlab.iob.uu.se\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/jakobssonlab.iob.uu.se\/index.php\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/jakobssonlab.iob.uu.se\/index.php\/wp-json\/wp\/v2\/comments?post=2169"}],"version-history":[{"count":2,"href":"https:\/\/jakobssonlab.iob.uu.se\/index.php\/wp-json\/wp\/v2\/pages\/2169\/revisions"}],"predecessor-version":[{"id":2733,"href":"https:\/\/jakobssonlab.iob.uu.se\/index.php\/wp-json\/wp\/v2\/pages\/2169\/revisions\/2733"}],"up":[{"embeddable":true,"href":"https:\/\/jakobssonlab.iob.uu.se\/index.php\/wp-json\/wp\/v2\/pages\/16"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/jakobssonlab.iob.uu.se\/index.php\/wp-json\/wp\/v2\/media\/2155"}],"wp:attachment":[{"href":"https:\/\/jakobssonlab.iob.uu.se\/index.php\/wp-json\/wp\/v2\/media?parent=2169"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}