TT.TTo

TT.TTo Split model
Simple split model

By counting the number of derived variants in two samples of size two (one sample of size two from each of the two sub-populations) in a simple split model (see figure), TT estimates all parameters. Specifically, each split time (in generations scaled by the mutation rate) is estimated separately. TT assumes a model with a constant ancestral population size (NA in the figure). TTo alleviates this assumption but requires an appropriate outgroup. 

The software was created by Per Sjödin, James McKenna and Mattias Jakobsson.

Reference:

Sjödin, P., McKenna, J. & Jakobsson, M. (2021). Estimating divergence times from DNA sequences, Genetics, Volume 217, Issue 4, iyab008, https://doi.org/10.1093/genetics/iyab008