Publications

2018


82. Valdiosera C, Günther T, Vera-Rodríguez JC, Ureña I, Iriarte E, Rodríguez-Varela R, Simões LG, Martínez-Sánchez RM, Svensson EM, Malmström H, Rodríguez L, Bermúdez de Castro J-M, Carbonell E, Alday A, Hernández Vera JA, Götherström A, Carretero J-M, Arsuaga JL, Smith CI & Jakobsson M (2018). Four millennia of Iberian biomolecular history illustrate the impact of prehistoric migrations at the far end of Eurasia. Proceedings of the National Academy of Sciences ahead of print. Journal website, PDF

81. T Naidoo, P Sjödin, C Schlebusch & M Jakobsson (2018). Patterns of variation in cis-regulatory regions: examining evidence of purifying selection. BMC Genomics 19: 95. Journal website, PDF

80. M Lombard, M Jakobsson & C Schlebusch (2018). Ancient human DNA: How sequencing the genome of a boy from Ballito Bay changed human history. South African Journal of Science 114: 1-3. Journal website, PDF

79. T GüntherH Malmström, EM Svensson, A Omrak, F Sanchez-Quinto, GM Kılınç, M Krzewińska, G Eriksson, M Frazer, H Edlund, AR Munters, A Coutinho, LG Simões, M Vicente, A Sjölander, B Jansen SellevoldR Jørgensen, P Claes, MD Shriver, C Valdiosera, MG Netea, J Apel, K Lidén, B Skar, J Storå, A Götherström & M Jakobsson (2018). Population genomics of Mesolithic Scandinavia: Investigation early postglacial migration routes and high-latitude adaptation. PLoS Biology 16(1): e2003703. Journal website

78. M Frazer, F Sanchez-Quinto, J Evans, J Storå, A Götherström, P Wallin, K Knutsson & M Jakobsson (2018). New insights on cultural dualism and population structure in the Middle Neolithic Funnel beaker culture on the island of Gotland. Journal of Archaeological Science: Reports, 17: 325-334. Journal website, PDF

2017


77. R Rodrı́guez-Varela, T Günther, M Krzewińska, J Storå, TH Gillingwater, M MacCallum, JL Arsuaga, K Dobney, C Valdiosera, M Jakobsson, A Götherström & L Girland-Fink. (2017). Genomic Analyses of Pre-European Conquest Human Remains from the Canary Islands Reveal Close Affinity to Modern North Africans. Current Biology, 27: 3396-3402Journal website, PDF

76. CM Schlebusch, H Malmström, T Günther, P Sjödin, A Coutinho, H Edlund, AR Munters, M Vicente, M Steyn, H Soodyall, M Lombard & M Jakobsson. (2017). Southern African ancient genomes estimate modern human divergence to 350,000 to 260,000 years ago. Science, 28. September. Journal website, PDF

75. C Hedenstierna-Jonson, A Kjellström, T Zachrisson, M Krzewińska, V Sobrado, N Price, T Günther, M Jakobsson, A Götherström & J Storå. (2017). A female Viking warrior confirmed by genomics. American Journal of Physical Anthropology, 164:853-860. Journal website, PDF

74. N Hollfelder, CM Schlebusch, T Günther, H Babiker, HY Hassan & M Jakobsson. Northeast African genomic variation shaped by the continuity of indigenous groups and Eurasian migrations. (2017). PLOS Genetics, 13(8): e1006976. Journal website, PDF

73. KA Owers*, P Sjödin*, CM Schlebusch, P Skoglund, H Soodyall & M Jakobsson. Adaptation to infectious disease exposure in indigenous Southern African populations. (2017). Proceedings of the Royal Society B, 284. Journal website, PDF

72. M Chylenski, A Juras, E Ehler, H Malmström, J Piontek, M Jakobsson, A Marciniak & M Dabert. (2017). Late Danubian mitochondrial genomes shed light into the Neolithisation of Central Europe in the 5th millennium BC. BMC Evolutionary Biology, 17:80. Journal website, PDF

71. A Goldberg, T Günther, NA Rosenberg & M Jakobsson. (2017). Reply to Lazaridis and Reich: Robust model-based inference of male-biased admixture during Bronze Age migration from the Pontic-Caspian Steppe. Proceedings of the National Academy of Sciences, 114: E3875-E3877. Journal website, PDF

70. A Goldberg, T Günther, NA Rosenberg & M Jakobsson. (2017). Ancient X-chromosomes reveal contrasting sex bias in Neolithic and Bronze Age Eurasian migrations. Proceedings of the National Academy of Sciences, 114: 2657-2662, Journal website, PDF

69. R Nielsen, JM Akey, M Jakobsson, JK Pritchard, S Tishkoff & E Willerslev. (2017). Tracing the peopling of the world through genomics. Nature 541: 302-310. Journal website, PDF

68. A Juras, M Chyleński, M Krenz-Niedbała, H Malmström, E Ehler, Ł Pospieszny, S Łukasik, J Bednarczyk, J Piontek, M Jakobsson, M Dabert. (2016). Investigating kinship of Neolithic post-LBK human remains from Krusza Zamkowa, Poland using ancient DNA. Forensic Science International: Genetics 26: 30-39. Journal websitePDF

2016


67. C Jeong, AT Ozga, D Witonsky, H Malmström, H Edlund, CA Hofman, RW Hagan, M Jakobsson, CM Lewis, Jr., M Aldenderfer, A Di Rienzo & C Warinner. (2016). Long-term genetic stability and a high altitude East Asian origin for the peoples of the high valleys of the Himalayan arc. Proceedings of the National Academy of Sciences USA, 113: 7485-7490. Journal website, PDF

66. S Sten, C Loven, A Kjellstrom, K Liden, M Vretemark, CH Vala, O Ljunggren, M Fjallstrom, A Shalabi, O Duvernoy, M Segelsjo, H Malmström & M Jakobsson. (2016). Erik den heliges skelett. Fornvannen, 111: 27-40. PDF

65. T Günther & M Jakobsson (2016). Genes mirror migrations and cultures in prehistoric Europe – a population genomic perspective. Current Opinion in Genetics and Development 41: 115-123. Journal website, PDF

64. CM Schlebusch, F Prins, M Lombard, M Jakobsson & H Soodyall. (2016). The disappearing San of southeastern Africa and their genetic affinities. Human Genetics 135: 1365-1372. Journal website, PDF, Supplement

63. L Gattepaille, T Günther & M Jakobsson. (2016). Inferring past effective population size from distributions of coalescent times. Genetics. Journal website, PDF

62. G M Kılınç, A Omrak, F Özer, T Günther, A M Büyükkarakaya, E Bıçakçı, D Baird, H M Dönertaş, A Ghalichi, R Yaka, D Koptekin, S C Açan, P Parvizi, M Krzewińska, E A Daskalaki, E Yüncü, N D Dağtaş, A Fairbairn, J Pearson, G Mustafaoğlu, Y S Erdal, Y G Çakan, İ Togan, M Somel, J Storå, M Jakobsson & A Götherström. (2016). The demographic development of the first farmers in Anatolia. Current Biology 26: 2659-2666. Journal website, PDF

61. M Hervella, EM Svensson, A Alberdi, T Günther, N Izagirre, AR Munters, S Alonso, M Ioana, F Ridichi, A Soficaru, M Jakobsson, MG Netea & C de-la-Rua. (2016). The mitogenome of a 35,000-year-old Homo sapiens from Europe supports a Palaeolithic back-migration to Africa. Scientific Reports 6, Article number: 25501. Journal websitePDF

60. A Omrak, T Günther, C Valdiosera, EM SvenssonH Malmström, H Kiesewetter, W Aylward, J StoråM Jakobsson & A Götherström. (2016). Genomic Evidence Establishes Anatolia as the Source of the European Neolithic Gene Pool. Current Biology 26: 270. Journal websitePDFSupplement

2015


59. T Günther, C Valdiosera, H Malmström, I Ureña, R Rodriguez-Varela, ÓO Sverrisdóttir, EA Daskalaki, Skoglund, Naidoo, EM Svensson, JM Bermúdez de Castro, E Carbonell, M Dunn, J Storå, E Iriarte, JL Arsuaga, J-M Carretero, A Götherström & M Jakobsson. (2015). Ancient genomes link early farmers from Atapuerca in Spain to modern-day Basques. Proceedings of the National Academy of Sciences, 112(38): 11917-11922. Journal websitePDFSupplement

58. M Raghavan, M Steinrücken, K Harris, S Schiffels, S Rasmussen, M DeGiorgio, A Albrechtsen, C Valdiosera, M Metspalu, JR Homburger, J Wall, OE Cornejo, JV Moreno-Mayar, TS Korneliussen, T Pierre, M Rasmussen, PE Campos, P de Barros Damgaard, ME Allentoft, J Lindo, E Metspalu, R Rodriguez-Varela, J Mansilla, C Henrickson, A Seguin-Orlando, H Malmström, T Stafford Jr., SS Shringarpure, A Moreno-Estrada, M Karmin, K Tambets, A Bergström, Y XUe, V Warmuth, AD Friend, J Singarayer, P Valdes, F Balloux, I Leboreiro, J Luis Vera, H Rangel-Villalobos, D Pettener, D Luiselli, LG Davis, E Heyer, CPE Zollikofer, MS Ponce de León, CI Smith, V Grimes, K-A Pike, M Deal, BT Fuller, B Arriaza, V Standen, MF Luz, F Ricaut, N Guidon, L Osipova, MI Voevoda, OL Posukh, O Balanovsky, M Lavryashina, Y Bogunov, E Khusnutdinova, M Gubina, E Balanovska, S Federova, S Litvinov, B Malyarchuk, M Derenko, MJ Mosher, D Archer, J Cybulski, B Petzelt, J Mitchell, R Worl, PJ Norman, P Parham, BM Kemp, T Kivisild, C Tyler-Smith, MS Sandhu, M Crawford, R Villems, D Glenn Smith, MR Waters, T Goebel, JR Johnson, RS Mahli, M Jakobsson, DJ Meltzer, A Manica, R Durbin, CD Bustamante, YS Song, R Nielsen & E Willerslev. (2015). Genomic evidence for the Pleistocene and recent population history of Native Americans. Science, 349: 842. Journal websitePDFSupplement

57. CM Schlebusch*, LM Gattepaille*, K Engström, M Vahter, M Jakobsson & K Broberg. (2015). Human Adaptation to Arsenic-Rich Environments. Molecular Biology and Evolution, 32(6): 1544-1555. Journal websitePDFSupplement (chosen by faculty of 1000)

56. H Malmström*, A Linderholm*, P Skoglund, J Storå, P Sjödin, TMP Gilbert, G Holmlund, E Willerslev, M Jakobsson, K Liden & A Götherström. (2015). Ancient mitochondrial DNA from the northern fringe of the Neolithic farming expansion in Europe sheds light on the dispersion process. Philosophical Transactions of the Royal Society of London B: Biological Sciences, 370: 373. Journal websitePDF

55. NM Kopelman, J Mayzel, M Jakobsson, NA Rosenberg & I Mayrose. (2015). CLUMPAK: A program for identifying clustering modes and packaging population structure inferences across K. Molecular Ecology Resources, 15(5): 1179-1191. Journal websitePDFSupplement

54. N Duforet-Frebourg*, LM Gattepaille*, MGB Blum & M Jakobsson. (2015). HaploPOP: a software that improves population assignment by combining markers into haplotypes. BMC Bioinformatics 16: 242. Journal websitePDF

53. RR daFonseca, BD Smith, N Wales, E Cappellini, P Skoglund, M Fumagalli, JA Samaniego, C Carøe, MC Ávila-Arcos, DE Hufnagel, TS Korneliussen, FG Vieira, M Jakobsson, B Arriaza, E Willerslev, R Nielsen, MB Hufford, A Albrechtsen, J Ross-Ibarra & MTP Gilbert. (2015). The origin and evolution of maize in the Southwestern United States. Nature Plants 1. Journal websitePDFSupplement

2014


52. S Li*, CM Schlebusch*, & M Jakobsson. (2014) Genetic variation reveals large-scale population expansion and migration during the expansion of Bantu-speaking peoples. Proceedings B of the Royal Society, 281: 1448. Journal websitePDFSupplement

51. M Raghavan, M DeGiorgio, A Albrechtsen, I Moltke, P Skoglund, TS Korneliussen, B Gronnøw, M Appelt, HC Gulløv, M Friesen, W Fitzhugh, H Malmström, S Rasmussen, J Olsen, L Melchior, BT Fuller, SM Fahrni, T Stafford Jr. V Grimes, MAP Renouf, J Cybulski, N Lynnerup, MM Lahr, K Britton, R Knecht, J Arneborg, M Metspalu, OE Cornejo, A-S Malaspinas, Y Wang, M Rasmussen, V Raghavan, TVO Hansen, E Khusnutdinova, T Pierre, K Dneprovski, C Andreasen, H Lange, MG Hayes, J Coltrain, VA Spitsyn, A Götherström, L Orlando, T Kivisild, R Villems, M Crawford, FC Nielsen, J Dissing, J Heinemeier, M Meldgaard, C Bustamante, DH O’Rourke, M Jakobsson, MTP Gilbert, R Nielsen & E Willerslev. (2014) The Genetic Prehistory of the New World Arctic. Science, 345: 1255832. Journal websitePDFSupplement

50. P Skoglund, P Sjödin, T Skoglund, M Lascoux & M Jakobsson. (2014) Investigating Population History using Temporal Genetic Differentiation. Molecular Biology and Evolution, 31: 2516-2527. Journal website,  PDFSupplement

49. A Sjöstrand, P Sjödin, & M Jakobsson. (2014) Private haplotypes can reveal local adaptation. BMC Genetics, 15: 61. Journal websitePDFSupplement

48. P Skoglund*, H Malmström*, A Omrak, M Raghavan, C Valdiosera, T Günther, P Hall, K Tambets, J Parik, K-G Sjögren, J Apel, E Willerslev, J Storå, A Götherström & M Jakobsson. (2014) Genomic Diversity and Admixture differs for Stone-Age Scandinavian Foragers and Farmers. Science, 344: 747-750. Journal websitePDFSupplement

47. G Breton*, CM Schlebusch*, M Lombard, H Soodyall, P Sjödin & M Jakobsson. (2014) Lactase Persistence alleles reveal partial East African ancestry of southern African Khoe pastoralists. Current Biology, 24: 852-858. Journal websitePDFSupplement

46. P Sjödin, P Skoglund, & M Jakobsson. (2014). Assessing the maximum contribution from ancient populations. Molecular Biology and Evolution 31(5): 1248-1260. Journal websitePDFSupplement

45. M Rasmussen, SL Anzick, MR Waters, P Skoglund, M DeGiorgio, TW Stafford Jr, S Rasmussen, I Moltke, A Albrechtsen, SM Doyle, GD Poznik, V Gudmundsdottir, R Yadav, A Sapfo, SS White, M Allentoft, OE Cornejo, K Tambets, A Eriksson, P Heintzman, M Meiri, M Karmin, TS Korneliussen, TL Pierre, J Stenderup, L Saag, V Warmuth, MC Lopes, S Brunak, T Sicheritz-Ponten, I Barnes, M Collins, L Orlando, F Balloux, A Manica, R Gupta, M Metspalu, CD Bustamante, M Jakobsson, R Nielsen, & E Willerslev. (2014) The genome of a late Pleistocene human from a Clovis burial site in western Montana. Nature, 506: 225-229. Journal websitePDFSupplement

44. P Skoglund, BH Northoff, MV Shunkov, AP Derevianko, S Pääbo, J Krause & M Jakobsson. (2014) Separating endogenous ancient DNA from modern-day contamination: application to a Siberian Neandertal. Proceedings of the National Academy of Sciences USA, 111: 2229-2234. Journal websitePDFSupplement

43. M Raghavan*, P Skoglund*, K Graf, M Metspalu, A Albrechtsen, I Moltke, S Rasmussen, T Stafford, L Orlando, E Metspalu, M Karmin, K Tambets, S Rootsi, R Mägi, P Campos, E Balanovska, O Balanovsky, E Khusnutdinova, S Litvinov, L Osipova, S Federova, M Voevoda, M DeGiorgio, T Sicheritz-Ponten, S Brunak, S Demeshchenko, T Kivisild, R Villems, R Nielsen, M Jakobsson & E Willerslev. (2014) Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans. Nature, 505: 87-91. Journal websitePDFSupplement

2013


42. P Skoglund, J Storå, A Götherström, M Jakobsson. (2013) Accurate sex identification of ancient human remains using DNA shotgun sequencing. Journal of Archaeological Science, 40: 4477–4482. Journal website, PDF, Supplementnews highlight by Nature

41. L Gattepaille, M Jakobsson, & MGB Blum. (2013) Inferring population size changes with sequence and SNP data: lessons from human bottlenecks. Heredity, 110: 409-419 Journal websitePDF

40. M Jakobsson, MD Edge, & NA Rosenberg. (2013) The relationship between FST and the frequency of the most frequent allele. Genetics, 193: 515-528. Journal websitePDF

39. F Jay, P Sjödin, M Jakobsson, & MGB Blum. (2013) Anisotropic isolation by distance: the main orientations of human genetic differentiation. Molecular Biology and Evolution, 30: 513-525.  Journal websitePDFSupplement (“from the cover”)

38. CM Schlebusch, CM Lewis Jr, K Engström, G Concha, RY Tito, AJ Obregn-Tito, D Huerta, SI Polo, AC Medina, TD Brutsaert, M Vahter, M Jakobsson, & K Broberg. Possible Positive Selection for an Arsenic-Protective Haplotype in Humans. Environmental Health Perspectives, 121: 53-58. Journal websitePDFSupplement

37. CM Schlebusch*, P Sjödin*, P Skoglund*, & M Jakobsson. (2013) Stronger signal of recent selection for lactase persistence in Maasai than in Europeans. European Journal of Human Genetics. 21: 550-553. Journal websitePDFSupplement

2012


36. CM Schlebusch*, P Skoglund*, P Sjödin, LM Gattepaille, D Hernandez, F Jay, S Li, M De Jongh, A Singleton, MGB Blum, H Soodyall, & M Jakobsson. (2012) Genomic variation in seven Khoe-San groups reveals adaptation and complex African history. Science, 338: 374-379. Journal website, PDF, SupplementNews article in Nature by M Kaplan, News highlight in Science (chosen by faculty of 1000)

35. P Skoglund, H Malmström, M Raghavan, J Storå, P Hall, E Willerslev, MTP Gilbert, A Götherström & M Jakobsson. (2012) Origins and Genetic Legacy of Neolithic Farmers and Hunter-Gatherers in Europe. Science, 336: 466-469. Journal websitePDF, SupplementData,  News & Analysis by M Balter, Science podcast (chosen by faculty of 1000)

34. S Li & M Jakobsson (2012) Estimating demographic parameters from large-scale population genomic data using Approximate Bayesian Computation. BMC Genetics 13: 22. Journal websitePDFSupplement(“highly accessed”)

33. V Nyström, J Humphrey, P Skoglund, NJ McKeown, S Vartanyan, PW Shaw, K Liden, M Jakobsson, I Barnes, A Angerbjörn, A Lister, & L Dalen. (2012) Microsatellite genotyping reveals end-Pleistocene shift in mammoth autosomal genetic variation. Molecular Ecology, 21(14): 3391-3402. Journal websitePDFSupplement(“from the cover”)

32. P Sjödin, AE Sjöstrand, M Jakobsson & MGB Blum. (2012) Resequencing Data Provide No Evidence for a Human Bottleneck in Africa during the Penultimate Glacial Period. Molecular Biology and Evolution. 29(7): 1851-1860. Journal websitePDFSupplement

31. P Sjödin & M Jakobsson. (2012) Population genetic properties of Copy Number Variation. Chapter 10 in Genomic Structural Variants: Methods in Molecular Biology vol. 838: 209-223, edited by L. Feuk, Springer, New York, USA.  PDF

30. J Li, H Li, M Jakobsson, S Li, P Sjödin & M Lascoux. (2012) Joint analysis of demography and selection in population genetics: Where do we stand and where could we go? Molecular Ecology, 21: 28-44. Journal websitePDFSupplement

29. LM Gattepaille & M Jakobsson. (2012) Combining markers into haplotypes can improve population structure inference. Genetics, 190: 159-174. Journal websitePDF

28. CM Schlebusch, H Soodyall & M Jakobsson. (2012) Genetic variation of 15 autosomal STR loci in various populations from southern Africa. Forensic Science International: Genetics, 6: e20-e21. Journal websitePDFSupplement

2011


27. L Huang*, M Jakobsson*, TJ Pemberton, JK Pritchard, SA Tishkoff, & NA Rosenberg. (2011) Haplotype variation and genotype imputation in African populations. Genetic Epidemiology, 38: 766-780. Journal website, PDF, Supplement, Data

26. P Skoglund & M Jakobsson. (2011) Archaic human ancestry in East Asia. Proceedings of the National Academy of Sciences USA, 108: 18301-18306. Journal website, PDF, Supplement

25. HMA Babiker, CM Schlebusch, HY Hassan & M Jakobsson. (2011) Genetic variation and population structure among Sudanese populations as indicated by the 15 Identifiler STR loci. Investigative Genetics, 2: 12. Journal website, PDF (“highly accessed”)

24. P Skoglund, A Götherström & M Jakobsson. (2011) Estimation of population divergence times from non-overlapping genomic sequences: examples from dogs and wolves. Molecular Biology and Evolution, 28: 1505-1517. Journal websitePDF

23. MGB Blum & M Jakobsson (2011) Deep divergences of human gene trees and models of human origins. Molecular Biology and Evolution. 28: 889-898. Journal websitePDF, Supplement (chosen by faculty of 1000)

2010


22. H Malmström, A Linderholm, K Lidén, J Storå, P Molnar, G Holmlund, M Jakobsson, & A Götherström (2010) High frequency of lactose intolerance in a prehistoric hunter-gatherer population in northern Europe. BMC Evolutionary Biology, 10: 89. Journal websitePDF

21. C Wang, ZA Szpiech, JH Degnan, M Jakobsson, TJ Pemberton, JA Hardy, AB Singleton & NA Rosenberg (2010) Comparing spatial maps of human population-genetic variation using Procrustes analysis. Statistical Applications in Genetics and Molecular Biology, 9: 13. Journal websitePDF

2009


20. TJ Pemberton, CI Sandefur, M Jakobsson & NA Rosenberg (2009) Sequence determinants of human microsatellite variability. BMC Genomics, 10: 612. Journal websitePDF, Supplement, Data

19. M Jakobsson (2009) COMPASS: A program for generating serial samples under an infinite sites model. Bioinformatics, 25: 2845-2847. Journal website, PDF

18. JBW Wolf, A Künstner, K Nam, M Jakobsson & H Ellegren (2009) Non-linear dynamics of non-synonymous (dN) and synonymous (dS) substitution rates affects inference of selection. Genome Biology and Evolution, 1: 308-319. Journal website, PDF, Supplement

17. M DeGiorgio, M Jakobsson & NA Rosenberg (2009) Explaining worldwide patterns of human genetic variation using a coalescent-based serial founder model of migration outward from Africa. Proceedings of the National Academy of Sciences USA, 106: 16057-16062. Journal website, PDF, Supplement

16. KB Schroeder, M Jakobsson, MH Crawford, TG Schurr, SM Boca, DF Conrad, RY Tito, LP Osipova, LA Tarskaia, SI Zhadanov, JD Wall, JK Pritchard, RS Malhi, DG Smith & NA Rosenberg (2009) Haplotypic background of a private allele at high frequency in the Americas. Molecular Biology and Evolution, 26: 995-1016. Journal website, PDF, Supplement

2008


15. ZA Szpiech, M Jakobsson & NA Rosenberg (2008) A rarefaction approach for counting alleles private to combinations of populations. Bioinformatics, 24: 2498-2504. Journal websitePDF

14. NA Rosenberg & M Jakobsson (2008) The relationship between homozygosity and the frequency of the most frequent allele. Genetics, 179: 2027-2036. Journal website, PDF

13. O François, MGB Blum, M Jakobsson, & NA Rosenberg (2008) Demographic history of European Populations of Arabidopsis thaliana. PLoS Genetics, 4: e1000075. Journal website, PDF, Supplement (chosen by faculty of 1000)

12. TJ Pemberton*, M Jakobsson*, DF Conrad, G Coop, JD Wall, JK Pritchard, PI Patel, & NA Rosenberg, (2008) Using population mixtures to optimize the utility of genomic databases: linkage disequilibrium and association study design in India. Annals of Human Genetics, 72: 535-546. Journal website, PDF, Data

11. M Jakobsson*, SW Scholz*, P Scheet*, JR Gibbs, JM VanLiere, H-C Fung, ZA Szpiech, JH Degnan, K Wang, R Guerreiro, JM Bras, JC Schymick, D Hernandez, BJ Traynor, J Simon-Sanchez, Matarin, M., A Britton, J van de Leemput, I Rafferty, M Bucan, HM Cann, JA Hardy, NA Rosenberg, & AB Singleton, (2008) Genotype, haplotype, and copy number variation in worldwide human populations. Nature, 451: 998-1003. Journal website, PDF, Supplement, Data (chosen by faculty of 1000)

2007


10. S Wang*, CM Lewis Jr*, M Jakobsson*, S Ramachandran, N Ray, G Bedoya, W Rojas, MV Parra, JA Molina, C Gallo, G Mazzotti, G Poletti, K Hill, AM Hurtado, D Labuda, W Klitz, R Barrantes, MC Bortolini, FM Salzano, ML Petzl-Erler, LT Tsuneto, E Llop, F Rothhammer, L Excoffier, MW Feldman, NA Rosenberg & A Ruiz-Linares (2007) Genetic variation and population structure in Native Americans. PLoS Genetics 3: 2049-2067. Journal website, PDF, Supplement, Data

9. M Jakobsson & NA Rosenberg (2007) CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics 23: 1801-1806. Journal website, PDF

8. M Jakobsson & NA Rosenberg (2007) The probability distribution under a population divergence model of the number of genetic founding lineages of a population or species. Theoretical Population Biology 71: 502-523. Journal website, PDF

7. M Jakobsson, T Säll, C Lind-Halldén & C Halldén (2007) The evolutionary history of the common chloroplast genome of Arabidopsis thaliana and A. suecica. Journal of Evolutionary Biology 20: 104-121. Journal website, PDF, Supplement

6. M Jakobsson, T Säll, C Lind-Halldén & C Halldén (2007) Evolution of chloroplast mononucleotide microsatellites in Arabidopsis thaliana. Theoretical and Applied Genetics 144: 223-235. Journal websitePDF, Supplement

2006


5. DF Conrad*, M Jakobsson*, G Coop*, X Wen, JD Wall, NA Rosenberg, JK Pritchard (2006) A worldwide survey of haplotype variation and linkage disequilibrium in the human genome. Nature Genetics 38: 1251-1260. Journal website, PDF, Supplement, Data (“from the cover”)

4. M Jakobsson, J Hagenblad, S Tavaré, T Säll, C Halldén, C Lind-Halldén & M Nordborg. (2006) A unique recent origin of the allotetraploid species Arabidopsis suecica: evidence from nuclear DNA markers. Molecular Biology and Evolution 23: 1217-1231. Journal website, PDF, Supplement

2005-2003


3. M Nordborg, T Hu, Y Ishino, J Jhaveri, C Toomajian, H Zheng, E Tomer, P Calabrese, J Gladstone, R Goyal, M Jakobsson, S Kim, Y Morozov, B Padhukasahasram, V Plagnol, NA Rosenberg, C Shah, JD Wall, K Zhao, T Kalbfleisch, V Schultz, M Kreitman, & J Bergelson (2005) The Pattern of Polymorphism in Arabidopsis thaliana. PLoS Biology 3: 1289-1299.
Journal website, PDF, Supplement (chosen by faculty of 1000)

2. T Säll, C Halldén, M Jakobsson & C Lind-Halldén (2004) Mode of reproduction and population structure in Arabidopsis suecica. Hereditas 141: 313-317.
Journal website, PDF

1. T Säll, M Jakobsson, C Lind-Halldén & C Halldén (2003) Chloroplast DNA indicates a single origin of the allotetraploid Arabidopsis suecica. Journal of Evolutionary Biology 16: 1019-1029. Journal website, PDF (chosen by faculty of 1000)

* Equal first author